NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214166_1074770

Scaffold Ga0214166_1074770


Overview

Basic Information
Taxon OID3300021139 Open in IMG/M
Scaffold IDGa0214166_1074770 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)695
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021219Metagenome219N
F088001Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0214166_10747701F088001GGAMKPDIVKEIIQLCVFVPCFLIIAWAISDFRAYKKELRENREWLDRYLAGK
Ga0214166_10747703F021219N/ADVTPVNVTIGSTWVDACATPFNKSVIEIVNRKGNYVQFKYTILNNKPWDTENTYSCSLDTFHVGWIHPESEKAKANEMGLSLEDYRTFVLEQEQEELEWQRYLREKRGHDKYYEEAPI

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