Scaffold Ga0214166_1027469

Overview

Basic Information

• Taxon OID: 3300021139
• Scaffold ID: Ga0214166_1027469
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1373
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057099	Metagenome / Metatranscriptome	136	N
F065414	Metagenome / Metatranscriptome	127	N
F073066	Metagenome / Metatranscriptome	120	N
F093242	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214166_10274691	F093242	N/A	MEYSNPEKDKVIDIIQDIMNRIDTNTNYNNNYENFLRIYAAMRKLKTKEPGLRFKVSKNPYK
Ga0214166_10274692	F065414	N/A	MSEPEVVINLNNLEELNIQKAKGLRKELLYIIRNRAYRQLYSLLNKVTASKKEKDNQERFKIIFKVLKRIKAMEPENHLNLASYIVSRNGV
Ga0214166_10274693	F057099	N/A	MKILRKDWELINKIAWNILNLKPEDSKKTLNLESSIDAFKLLGILNTPVFVHILISSLCRTINSIRPETTKMDIVRIANRALLIMREIKKRRPNWKFQFCPNNLSNAKETLKKRKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKIPELPDLIEYR
Ga0214166_10274694	F073066	N/A	MEEDLRKVHLESLLNNLEDSDKDRKIEICNIMKEMVKEEIEKAKRNQNNDMTYFLNKLKELLEKTISRYSE