Basic Information | |
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Taxon OID | 3300021139 Open in IMG/M |
Scaffold ID | Ga0214166_1011771 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2442 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029335 | Metagenome / Metatranscriptome | 188 | Y |
F077228 | Metagenome | 117 | Y |
F091089 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214166_10117713 | F029335 | AGGAG | MRTISTLNNGNIYQMDITEAIEIVQAYARQNTGGDILEAVKEMQDLVALDELPTRQKVAYRRFMRDMKQLFAPKVDA |
Ga0214166_10117715 | F077228 | AGGAG | MQKTYIVQVQGWGASEDEFYNMGAYSTRAKAEAALEEMLVEWEADGGDRADVVYEIETLTVDA |
Ga0214166_10117716 | F091089 | AGGAG | MFNTNTLAKAKLVFNKKLKTYKLVVAFNVHKTTREDKNGNTKIVHNFPVQAKCAYVSGDLLKSNLNAELAVALKHAQATTRTNNIVFVS |
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