Scaffold Ga0214166_1010519

Overview

Basic Information

• Taxon OID: 3300021139
• Scaffold ID: Ga0214166_1010519
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2638
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016273	Metagenome / Metatranscriptome	248	Y
F018369	Metagenome	235	Y
F046382	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214166_10105196	F046382	GAGG	MNKHNWPFLTDLGDPNWTGRTPRSMRVYSRYTRADERIPPVAWIVGLMLLAAVFGLVPFMSWVMQ
Ga0214166_10105197	F018369	AGG	MKYSYYELTDFGKRELMRQLTYELTDKKIAELMDQFADNVKLDDNGEPYIKIDREDVLMCAVPMYTHYIDINHVVKVTANEEDYE
Ga0214166_10105199	F016273	N/A	MFRFKELILNQTEEAILISWRLQQLFEGMVLDARAMQDVQDAIEMLKTLAKQVQK