Scaffold Ga0214166_1009405

Overview

Basic Information

• Taxon OID: 3300021139
• Scaffold ID: Ga0214166_1009405
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2848
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F018323	Metagenome / Metatranscriptome	235	N
F050893	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214166_10094051	F050893	N/A	KIGEIERLVMLLLIQKEKLEEREEADPSKGSIHKTLLAIKQLNRKLEIIPGNKKLRTSEELEMKVRKNE
Ga0214166_10094053	F018323	GAG	MYNNKNNDEVVELIKSLEENSVDLTSAMDTVRVLDELELPLFEHILINQICKDLNAISTEINHDREDERVFRKIFHKVRVLKLKNPEWKFKHRAKKSTYSRKRMIEEERLTLSQEEARELVKFERETEIINQINIEKSFEENRHLFKLIKESRFTRVGRRTWLSFYRFPDLRKITIYNEKNFLCKVEGIRRKYSRLKWSIVL
Ga0214166_10094055	F011134	N/A	MSTFAKSEENYDPKETLVDTIKTDLVSQFKICVDDINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRVEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK