Scaffold Ga0214166_1007136

Overview

Basic Information

• Taxon OID: 3300021139
• Scaffold ID: Ga0214166_1007136
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3424
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008351	Metagenome / Metatranscriptome	334	Y
F015440	Metagenome / Metatranscriptome	254	N
F015585	Metagenome / Metatranscriptome	253	N
F016361	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214166_10071361	F015440	N/A	RVLESNLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKELICERGAKIAEALTLPLIRNLRQLRDLCNKSKSEQTLLELNTFKFHIDYLSNMRQEQWTQDMLKTHIFIVIQQEMDNILNVLNPKVTEPLDKNQESNIRQEWTRVLSL
Ga0214166_10071364	F015585	N/A	MTKFRLHLYSKRLRIKYRFVKLKEIRMSQKNTESNQRLIKVINHCSRVAESKEVRELQLSPQLGELIKNLAGKGKEWSFILITYPKRNSEVQGKPPSEVKAEPGLSEEEKFFSSPW
Ga0214166_10071365	F016361	N/A	MCKKRELTEEPLIDGVNRPIGERSIQTLLQKQLALMALIDTMTITMDPEKGKKVFQEIVSIMKELKNMDATCTC
Ga0214166_10071368	F008351	N/A	MNSDQEIEPLETCSEELVHTVKESVEKLFSLMNTEFSRSSISNEEEDFSLLKQMCEAKANILKDNPSWSTFDPTTTLAGIAVGRIDWLDIEGPWDGVKNIENYKVIKKHLRELREYNPHWKLDEQDVIKRSTCHNC