| Basic Information | |
|---|---|
| Taxon OID | 3300021139 Open in IMG/M |
| Scaffold ID | Ga0214166_1006004 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3871 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009462 | Metagenome / Metatranscriptome | 317 | Y |
| F026556 | Metagenome / Metatranscriptome | 197 | Y |
| F063276 | Metagenome | 129 | Y |
| F070810 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214166_100600410 | F063276 | AGGA | MQDSTFRQNLDFILALVISIGAFVFVIWWNIENPHMTVRYDCSISEISSDYPIEVKEGCRKLRAEKILQLPK |
| Ga0214166_10060044 | F009462 | AGGAG | MELHESVRDTFKTMVIKEHEGFRLTLNKHEVISPKGLFSIDMVQESLKDGEVVDIQTYNFFMTRDEMATLASALTA |
| Ga0214166_10060046 | F026556 | GGAGG | MTSALIRLLFGISLIVIAVAFGPIIGIWALNTLFPQYLNIPLTWQTWLAFNVLFGGSYARLKK |
| Ga0214166_10060049 | F070810 | GGCGG | MLFLVRAIIKLETVNESWEIKILWHNQDGKWWNEACADVVEVFGLPGDRFTSHPYEDCMLFRFKSKKDYQLCKILLSDRI |
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