Scaffold Ga0214166_1005291

Overview

Basic Information

• Taxon OID: 3300021139
• Scaffold ID: Ga0214166_1005291
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4223
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029090	Metagenome / Metatranscriptome	189	N
F029723	Metagenome / Metatranscriptome	187	N
F032529	Metagenome / Metatranscriptome	179	N
F051885	Metagenome / Metatranscriptome	143	N
F063374	Metagenome / Metatranscriptome	129	Y
F075668	Metagenome / Metatranscriptome	118	N
F104447	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214166_10052911	F075668	N/A	MSNKYSVNDVRCLVMYALNKVDTQKDFCENFRVFSGLYVAIMAFKIYEPNKQFELEKGPLLYEQNHSSFYNSKGSKSRRKINRLNQFYE
Ga0214166_100529110	F051885	N/A	EQLKEKDKLSLQCIELAINLGVKQPKDFGECVEDLYNFKKKIKMYDPEFKFLDDKNVYIYQLLSRLDSIDSSLLPDMSKNTAICQRIHLENRVIRKNYPSWRVDFEQVLKTLKRNSNSEVQSKVRYILQMDKDGNPVLIREICNNSRSLGKDFECDCPDCKVSGDMKHLSLCPK
Ga0214166_10052912	F104447	AGGA	MTSTKTGYLCTTIHQLRLKSEFCDIINSIAVKKDFDSNARQYVRIHEILKEVKTINPDWRLTACAKYSWK
Ga0214166_10052913	F029090	N/A	MKRKSKIVTFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKANVLNKVYRGVSFFVRQEMKQENHFRLVYETINSIDLKKGYTKNFKWFKKLKNNLKFVYGRSPKWALHYQESALPDLGNLTENDFN
Ga0214166_10052914	F032529	N/A	MAESRRLIDVTDAERARMKTILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGDSEEQIRRRALAWEKLYEIRQVPVKESTSLKETSPEDTSCEVTSSTDTTSENEAKK
Ga0214166_10052916	F029723	N/A	MTSSDSSNDKQKVLMTPMQLSVYWRKVAAEALKLLNDVHLDEDHDSEDNLSAYKLLHEQLRELKRIDPVRPFNQITMGPIHPIVTSSCNCTLCDPSSEDIDSEDSTESVLI
Ga0214166_10052918	F063374	N/A	MSKKVRNIDNSNLSLTIPAYSKIMSTGSERTSKLNSFPQVQESCLERNRFESIFQNPGEILRQFSRINENELSLYTEILTKTVKVIPKESPHILIK