Scaffold Ga0214166_1001042

Overview

Basic Information

• Taxon OID: 3300021139
• Scaffold ID: Ga0214166_1001042
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12650
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046332	Metagenome / Metatranscriptome	151	N
F053787	Metagenome / Metatranscriptome	140	N
F066725	Metagenome / Metatranscriptome	126	N
F070906	Metagenome / Metatranscriptome	122	N
F075719	Metagenome / Metatranscriptome	118	N
F091933	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214166_100104213	F091933	N/A	MERNNRRRITFENFKGGLKIVLAYTDIAIETLRFNLAGGDGYFFNNKNWLNLVQQAKDTYGQILDCYLNESSSRGPFECEAVMVPLLRNLSELERIIQLGNNETALTTLTAYSNHLAQLIQVPYENWTATFLNTHIFCKEDATYTVFVNTKCQQTLI
Ga0214166_100104216	F046332	N/A	MNQSAQVSSSGHSRYTSMVSQGPLINGWCHERDQLVRRLIKMVNDVFVDDHYHGDNLVWVKPMRDIAEAIVRLDPSWRLECVTERYKCMVIKHPNCFCDRPITRANQ
Ga0214166_100104217	F066725	N/A	MCTRGVTWFTNPEGGEFTPIQLWDLREDLTKHLIIVLGRLTVELGSRFESPATLPHYMHLMHDTILKLKSIDSNWHLVYSAEKENCLRIMQHDCRCGFKNRRRKQL
Ga0214166_10010422	F075719	AGG	MTLKDLVVEPRGGTSIVLDMTIKDLVKESKLDTFDVEESHKDTLDPDMSLKDLACDSVGNYPRVLIPRTDLMSELSHNRKVCDQIMKSKHFKGKHPQKGEPKESSTGPRGFGTLMEPNTLDKKYLTGNFLGKMVPKTGRSRAGFERLMEFGESESSDEEVNFRNHKKVVGLKPPRQLNNNRKFGTVIQPANTSRFDNVYHRVYEHQKQVVEIDNENWFRKLCCCRKSPKEIVTIVDFSVGTRLKKDTSAV
Ga0214166_100104220	F070906	N/A	MTENIERPLVNGSNEPNGDETSEFIKQRDHHTTEIAKLLNSVREETSFRSNLSTYQSIHRHLMFLKDLDPEWGLTPFWNEECL
Ga0214166_10010425	F053787	N/A	MSERDEIEIEIVEEQSSQSDRVKLEKSIRKDIFLAAKMAHHIMKNVEYLNKQGHNSASECANQTYLKVMDMATQVESYFSDKRKAKVVTSNQDASEVNKVDKQALEKRIKENMKESLRLLNALLLALKTNKEKVCAYGDPDPSFGLINETLMATVRLSTNLYEAFQLEEVREKDLSLSEIQQINSIPIEDSTGELTSDSINQQSQEH