NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214166_1001042

Scaffold Ga0214166_1001042


Overview

Basic Information
Taxon OID3300021139 Open in IMG/M
Scaffold IDGa0214166_1001042 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12650
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046332Metagenome / Metatranscriptome151N
F053787Metagenome / Metatranscriptome140N
F066725Metagenome / Metatranscriptome126N
F070906Metagenome / Metatranscriptome122N
F075719Metagenome / Metatranscriptome118N
F091933Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214166_100104213F091933N/AMERNNRRRITFENFKGGLKIVLAYTDIAIETLRFNLAGGDGYFFNNKNWLNLVQQAKDTYGQILDCYLNESSSRGPFECEAVMVPLLRNLSELERIIQLGNNETALTTLTAYSNHLAQLIQVPYENWTATFLNTHIFCKEDATYTVFVNTKCQQTLI
Ga0214166_100104216F046332N/AMNQSAQVSSSGHSRYTSMVSQGPLINGWCHERDQLVRRLIKMVNDVFVDDHYHGDNLVWVKPMRDIAEAIVRLDPSWRLECVTERYKCMVIKHPNCFCDRPITRANQ
Ga0214166_100104217F066725N/AMCTRGVTWFTNPEGGEFTPIQLWDLREDLTKHLIIVLGRLTVELGSRFESPATLPHYMHLMHDTILKLKSIDSNWHLVYSAEKENCLRIMQHDCRCGFKNRRRKQL
Ga0214166_10010422F075719AGGMTLKDLVVEPRGGTSIVLDMTIKDLVKESKLDTFDVEESHKDTLDPDMSLKDLACDSVGNYPRVLIPRTDLMSELSHNRKVCDQIMKSKHFKGKHPQKGEPKESSTGPRGFGTLMEPNTLDKKYLTGNFLGKMVPKTGRSRAGFERLMEFGESESSDEEVNFRNHKKVVGLKPPRQLNNNRKFGTVIQPANTSRFDNVYHRVYEHQKQVVEIDNENWFRKLCCCRKSPKEIVTIVDFSVGTRLKKDTSAV
Ga0214166_100104220F070906N/AMTENIERPLVNGSNEPNGDETSEFIKQRDHHTTEIAKLLNSVREETSFRSNLSTYQSIHRHLMFLKDLDPEWGLTPFWNEECL
Ga0214166_10010425F053787N/AMSERDEIEIEIVEEQSSQSDRVKLEKSIRKDIFLAAKMAHHIMKNVEYLNKQGHNSASECANQTYLKVMDMATQVESYFSDKRKAKVVTSNQDASEVNKVDKQALEKRIKENMKESLRLLNALLLALKTNKEKVCAYGDPDPSFGLINETLMATVRLSTNLYEAFQLEEVREKDLSLSEIQQINSIPIEDSTGELTSDSINQQSQEH

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.