Scaffold Ga0214166_1000794

Overview

Basic Information

• Taxon OID: 3300021139
• Scaffold ID: Ga0214166_1000794
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15049
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (95.24%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017289	Metagenome / Metatranscriptome	241	Y
F044942	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214166_100079414	F044942	AGGA	MLDHLLNFEPEVSDNFTDFVPLGKVEPSSVLDAKVRTVDWLKSMGAVDDETLTTELDTQHARKAFANLVSATPDEITHTSLAEIKTPQAVRHLVTMLTAYDWEFVERAKELRGYTVAKILEECENPSASIRLKALALLGKVTEVGLFTDKIEVKKTEMSDAEIDSKIKEKLNRFMGVVDVTDVGDVLETQRLNA
Ga0214166_10007943	F017289	GGA	MKTKQEIKDKIIELYGATQALGEVMIFLHAQRMEKSKQMMALNHMLKEMEDKND