NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214166_1000777

Scaffold Ga0214166_1000777


Overview

Basic Information
Taxon OID3300021139 Open in IMG/M
Scaffold IDGa0214166_1000777 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15293
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008619Metagenome330Y
F064339Metagenome128N
F074309Metagenome119N
F096492Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214166_100077710F008619AGGAGMAGFQNIVEIQQKMNVNNRRTVGQQVSRSGQMTVAQYLTTVPWVFTITPHNFLYYPQVRDVIQAIDNLDRQLPDYITFQSTNLSWFTAMQGTATTASLNGTPTPNSQTINITSNGTFKAGDFISINGFVYKVTADSSGSVININRPLIGAPASTAPVLLGNNCSFYVVAEQLPTYTLNPMTNGAWVEWSSPFVFREYITAS
Ga0214166_100077714F074309GGAMAVFNKNSLTQVSGFDNPILSGELVWEQKAFWNLFMTNDAGILPLTGATIDAQIIRRVLTNVIDTRNGLTFTIGDYTPTPTPISLTVTNINTTGGSFTLVIDDSAWGLMATDPGLDIADPNGIGYSGRIKISFPANGSTPAEDIIVFLFFIVRSDGIVVE
Ga0214166_10007772F096492N/AMAIARFEQINVNNVTNSVDTIGQQTTTITLWFQTRALVQDVRDATQIGKDDRTYTKNVKFVLNFTPNTLQMSEHQNLYSITWRGQDYRINDVMESNDRMNVSFLCYRNDPAVSV
Ga0214166_10007777F064339N/AMTNLANAFGSKFMEQKDSLRIRSFKFGGHTFKVKVPLTIETEAMFERAKVVNEEKAEKYYQDMAKEFLDNRAKYENDPEVKYLENDVLIKDRSIRETTRNKVLTENRLIEAFKMLVPENKDFDMNTITYADIEELFPFSVQLELLDYINATISPNYTATKGK
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