Scaffold Ga0214166_1000769

Overview

Basic Information

• Taxon OID: 3300021139
• Scaffold ID: Ga0214166_1000769
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15371
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012098	Metagenome / Metatranscriptome	283	Y
F016389	Metagenome / Metatranscriptome	247	Y
F084140	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214166_100076912	F012098	N/A	MPKVHSIGAKHFFQVIDLPVVWGKKFVVRGWTQEIDEPFRTSEPYLLRLPKYKALAFGKWTGIKTEEEALKSALNTREVTYDDFTKEAGWTPAPDSDRETSSEDFYSGLDSVDGAQHVHNWQTYYRMAKESE
Ga0214166_100076913	F084140	GGA	MEHSMYTIGRLITEWQKSQNDVLLDEVLLGAEAFHAIAKELKKRY
Ga0214166_10007699	F016389	GGA	MPLVRKFAIQGHAVPSVAHSPRGPFPPEVLAQPRMEVDPHHSDSLHVGLDDIRFFKCRACEEVLLEADLDNHDCEEINGY