Scaffold Ga0214166_1000149

Overview

Basic Information

• Taxon OID: 3300021139
• Scaffold ID: Ga0214166_1000149
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36058
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (84.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F034419	Metagenome	174	Y
F037510	Metagenome	167	N
F072911	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214166_100014918	F000324	AGGA	MTTPIAPHHQLTYDGAVLNIFHANKGEGLPRHEHTWAHATMCHAGSCIVRKEGRELVMTKETQPVNLVANEWHEIEALEDGTVFVNVFAEGKY
Ga0214166_100014921	F034419	GAG	MYNEGKALVRDVQKTVGEVKQIGKEVKGIWGWITSIFAEPVEEKKTLQDIHPKNQKKEKIKFDEQVLYAEIGDQLVSFFRNYKACSDAIHEEESKIEQIYDPDGETYERAIRLVMAKTQLEQMRVELTEYMIYHVPPELKDLYSRVNEMIGSVKTKQEMARKAELKKKAQRLAEAREAADRAWLMGACTVVVIFIAIYLAGLMWAINRASHGGM
Ga0214166_100014922	F072911	AGGA	VGNKSSESWGYVVAIIVLALLFVLILPVIGIMYMDIHQERILIANDLKRIEKLKKELEAQKDK
Ga0214166_100014944	F037510	GGA	MIKLTYEHICDGCKKTLDTEVYECSDYPGMEFPKTHRMFSFHWRGLNAQLCKDCAAPLYEAQRQTMEIIIANRGQE