Scaffold Ga0214164

Basic Information
Taxon OID	3300021138 Open in IMG/M
Scaffold ID	Ga0214164_1003831 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021138 Open in IMG/M

Scaffold ID

Ga0214164_1003831 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6936
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (38.89%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6936

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (38.89%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6864	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.0412

Long. (^o)

-89.6864

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046173	Metagenome / Metatranscriptome	151	N
F057099	Metagenome / Metatranscriptome	136	N
F057882	Metagenome / Metatranscriptome	135	N
F065414	Metagenome / Metatranscriptome	127	N
F101040	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214164_100383117	F065414	N/A	MSEPEVVINLNNLEELNIHKAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKEKDNKERFKIIFKVLKRIKAMEPENHLNLASYIVSRNGV
Ga0214164_100383118	F057099	N/A	LFRMKILRKDWELISKIAWNILNLKLEDSKKTLNLGSSIDAFKLLGILNTPVFVHILISSLCRTINLIRPETREMDIVRIANRALLIMREIKKRRPNWKFQFCPNSSANSKETLKKQKSNQKYFSKISKLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKLPELPDLIEYR
Ga0214164_10038314	F101040	GAG	MNTEFFRARLEEVRSNLELTRVDKRKTLENLLERNLTQELKEVLRNNLSLLIQAEEKYLELEKQYEILIRCGRH
Ga0214164_10038315	F057882	GGA	MSCGNNLKEFDHPEYGILDPSQVRELRDELTRCFVDYIGGLSKHLREREAVDIEEDRVTKSHYLRVCATIQNLNKIDPGWCLRYFAPDDECLKIKLHDCRCCYHTCQELIRVIQSPKSNSNKSSQTEDRELTQK
Ga0214164_10038318	F046173	GAG	MLSLKDREIYEVIIVEIENYKNSNHDKMSKRINYAAKSPALDIILNNIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSIGVQLYIKEINTFYKEKLIGRLNKLKDTLKNDIPIKISEIQETHQRIRKDQDKLNKMKQDPQYNNMQQWGIQLSLERVIEIDSKLIKLTKLLNYITEKQKEQE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214164_1003831

Overview

Ecosystem & Geography

Associated Families

Sequences