Scaffold Ga0214164_1003160

Overview

Basic Information

• Taxon OID: 3300021138
• Scaffold ID: Ga0214164_1003160
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8005
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F026565	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214164_10031602	F026565	GGA	MAMFSKNTITQVSGFDNPCIAGELVWEQQTYWNLDITASDGVTSLDLSAATIDAEIIRRTVTNLQDSRYGLAFDIGNYTPTPSPVTLTITNEDLVHGKFTLVINDSTWGLINSDPDLDIGAQNCVAFSGRIKISFPADETNPANDYIIFLLFLVRSDGIVVE
Ga0214164_10031608	F000934	AGTAG	MPNLTTILSISESVMINDQRFVGQIISRNKRISTSEVMTVVPFQFTFKPMNYLLYSKNRDLLANLRYYDRSLTQYLNFGSTGWVNYISYQGDMTSSQIPSCQWQTSSTGTNLVLGNLPSISSTAYIVKAGDFCQMDSYCYIATQNVLRGSGSTVTIPVHRTILTALVSPQNAVIGQYGTTIAMGGNTYTGCTFPVILQAYPTYTLIPMTNDSFISWSNGFQALEAVT