Scaffold Ga0214164_1001150

Overview

Basic Information

• Taxon OID: 3300021138
• Scaffold ID: Ga0214164_1001150
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15553
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium zucineum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036062	Metagenome	170	Y
F041555	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214164_100115017	F036062	AGGA	MALNHTNITVGTTPTLLVTMPNGVGYVAVQVNNRDSAAVFLGDSAVTNTVGINGGQNLAANGTVQVWLHGNDSLYAVSASGTATGAVSVIYSA
Ga0214164_100115018	F041555	AGG	MTLGVHQVDGRLAASSAVKIRAALVKSVNAREVITGYMQTHPTVSEFISQDRARARAWALHNVTLDHTALESAIRQHYAVMYVTGVASTYEAFGKQLRQRKAAKQPPHNWNPSAFAVSALQNAVNWDTWKPGNPAAAALLKPPGGLEKLLNGIKIKSLDMKKTSYDLLGLRLADGIAIGASPNQLADMIESSLSSPERALTIALTEGSRAANQAATDSFQALGVEQIEWVSAEPDDEDCDIGGETVNVGDSFSNGLTADDIPVHPNCRCTTTPAEINWDTFDFGASLDEALAQD