Scaffold Ga0214165_1003696

Overview

Basic Information

• Taxon OID: 3300021137
• Scaffold ID: Ga0214165_1003696
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6276
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016247	Metagenome	248	Y
F055446	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214165_100369612	F055446	GAG	MAIKNKKYNYYKLNVGFFPDIVKLCFDNTVFQQILKDHDVTLKANALDCGIAETHLIGDGKDAIIILVFDMSLVNDNLGELVDTIAHEVSHAVDHLAEHIGEEDNFVNETRAYLSGHLAGQIFKICLHEKEKHARKASGKLLKQKSKRVKGPELQVDQLSVGGTGQGSVPLGQNSLSRTKDFDWQDITKADDSFFPDERTGF
Ga0214165_10036968	F016247	AGGA	MTHFIVEHNYRGSYVMETICGVEDIDTSMYKDLLGVWVCDSQEELQIMEKQLKEMRDARSGQPS