Scaffold Ga0214167_1021983

Overview

Basic Information

• Taxon OID: 3300021136
• Scaffold ID: Ga0214167_1021983
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1561
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0412
  • Long. (^o): -89.6864

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002300	Metagenome / Metatranscriptome	573	Y
F041585	Metagenome / Metatranscriptome	159	Y
F098642	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214167_10219831	F002300	GGA	MATVYSTRSCIPKLCCSLAAVGLFIAGILITGAYPHSNLHDLDFNQTQKEANLTSPGNLTMAAETLAFIQATNKEIHDQMDKALDRIERSMRRIPELAEKMSRSTRAVEPSQALDQAGAIFGNYKPKPEYQLSEYATGKRQRWRRNLGSGTNDSPTASATPKTETAAEWFLQNLASSLFPFTGFTSIGAALHLATGLRRSKRAPSVYPFEITDLLDYEARKKHSQNKILGEKIAKILHQNTDFSDEIAANNQTPSEKLKKDPIMALVTKTISTYMLVKHSKNAKELYNKENLSPWGEPFFKKKE
Ga0214167_10219832	F098642	N/A	MGGAIFQKEGVKVTVTASKVKITISAKEIIQKMTLKVKPMTSQ
Ga0214167_10219833	F041585	GAG	MIKIDEAKIIARDDEVKAIEKTVEEFRASKKKQIDKGVETKAVITLPHPSATIS