Scaffold Ga0214175_1001319

Overview

Basic Information

• Taxon OID: 3300021133
• Scaffold ID: Ga0214175_1001319
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5642
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028091	Metagenome / Metatranscriptome	192	Y
F062384	Metagenome / Metatranscriptome	130	Y
F091486	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214175_10013195	F091486	AGG	LVKKYDCEQLGSTNDKCIESLHKKFVLRFEQPKQANASKVSLEIVHDSLRTFAQEKWHLFSGCTDVLLENQPVFKNPHMKSVQVLLFAVLREQFLQHGQTPAYHFIHAKKKVSDAQQGDAGYAERKHKSEERLISLFETESVVNKAIYEEWNKSKKKSDMADALCMAVDYIN
Ga0214175_10013198	F062384	N/A	MSLPGALAGPAITAMASISPLDSVLHIFNTNPYFIGIMMLILNLGGRFIGLEVTKKQEQFFQHPWVRRVLIFTVLFVATRSIWVAFWATVAVVLLLGYLFNENSALCIFGQGGQNGSTCSQQDDAKNKVDDMTPEEKEILQRLMAKAQRYQSTTNSAANIADSEDDVLHTDIYAANLFLLRK
Ga0214175_10013199	F028091	N/A	VIDYDRLIEMNDWPTFLSFHGTADGVLRAIMILFAGVLIVKYSTLFEEEYNKKLTELYIYPWWRLLIVVIILTSAVWCPRVGILIALLTFFYLSDMNTLIQPMTDL