Basic Information | |
---|---|
Taxon OID | 3300021133 Open in IMG/M |
Scaffold ID | Ga0214175_1000065 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 41613 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F033683 | Metagenome | 176 | Y |
F035607 | Metagenome / Metatranscriptome | 171 | Y |
F102402 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214175_100006514 | F033683 | GGA | MHYDDIIHEARTASADVRWFNGTSESIFARLDRLQEILDTTRMAASRDTVGELEMEHYASILSELGTEKEQLEKLAAEYVDFDTEEYLNSLPGGTIAKEYRVSSAGTSDLGQDDGSLLYRTASAVENEYRDADWINVVTAGAEVWVEDQHSRLLADSLDTREAAVFYIEQKTLPILDVVKRASIIENFVDNVEICRRAKREGQEFRATKSASANRLAANFVKEALDDSFGDDLNWL |
Ga0214175_100006516 | F102402 | AGGAG | VDSTAENISRVVAILTAIVSEQEELAYDLVLESDPVELFSALTGILLSALNRIAESNGRKIEDYLQELGIFASKAK |
Ga0214175_100006543 | F035607 | AGGAG | MSKTVSRSGDNGESQPVPVADLGGHFEEHRPDPVELSKARTPAQISFEGMQSIETNGWIENLMSSSTVFTSAKGSFKLSGNGYHGSIQTIDEAIRRDAYVLRAVQRGRIRFLTDDEAMERIGELQDETSHSESHLDHLRESLNAGASDNNGMYKIPLPDEAEPKGPSQTWEQVWQGSNTPKPKNV |
⦗Top⦘ |