Scaffold Ga0214175_1000065

Overview

Basic Information

• Taxon OID: 3300021133
• Scaffold ID: Ga0214175_1000065
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 41613
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033683	Metagenome	176	Y
F035607	Metagenome / Metatranscriptome	171	Y
F102402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214175_100006514	F033683	GGA	MHYDDIIHEARTASADVRWFNGTSESIFARLDRLQEILDTTRMAASRDTVGELEMEHYASILSELGTEKEQLEKLAAEYVDFDTEEYLNSLPGGTIAKEYRVSSAGTSDLGQDDGSLLYRTASAVENEYRDADWINVVTAGAEVWVEDQHSRLLADSLDTREAAVFYIEQKTLPILDVVKRASIIENFVDNVEICRRAKREGQEFRATKSASANRLAANFVKEALDDSFGDDLNWL
Ga0214175_100006516	F102402	AGGAG	VDSTAENISRVVAILTAIVSEQEELAYDLVLESDPVELFSALTGILLSALNRIAESNGRKIEDYLQELGIFASKAK
Ga0214175_100006543	F035607	AGGAG	MSKTVSRSGDNGESQPVPVADLGGHFEEHRPDPVELSKARTPAQISFEGMQSIETNGWIENLMSSSTVFTSAKGSFKLSGNGYHGSIQTIDEAIRRDAYVLRAVQRGRIRFLTDDEAMERIGELQDETSHSESHLDHLRESLNAGASDNNGMYKIPLPDEAEPKGPSQTWEQVWQGSNTPKPKNV