Scaffold Ga0214175_1000004

Overview

Basic Information

• Taxon OID: 3300021133
• Scaffold ID: Ga0214175_1000004
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 140180
• Total Scaffold Genes: 156
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (20.51%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F091108	Metagenome	107	N
F104346	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214175_1000004100	F091108	AGG	MNKAFLRRQAASKWKDLQCGIWERWDYRCCYLVIRQLDNGKFKPMIGAMADLSMPGADLPPEGYHQLNTLDEAKNFLHKYVAYIREVWDKQVIEGRK
Ga0214175_1000004153	F104346	N/A	MKKLLTFLALSLIAIVVNAAPVSGDLDLGFTSKLIQQGQLVGTNYATAGVDTNVYGIDLAVTAFDKVSDTTTTSVVAGKTVSTTDASGLKRVYLDAGYKFTSPLADLTLGAELRHVNAAEAAGQANHNFLPFVKLSGSWFGGHLNWQGRALNDTVNRSNNYEFGVNTPINTFGALKVVPALVVGFNDPGAATIAALKNVKKYYQPGIGLEFHGVTANLFAQRTSLTDSAAQITGYNVGYKFKF