Scaffold Ga0214196_1011827

Overview

Basic Information

• Taxon OID: 3300021132
• Scaffold ID: Ga0214196_1011827
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 25AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1377
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038078	Metagenome / Metatranscriptome	166	N
F043767	Metagenome / Metatranscriptome	155	N
F045533	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214196_10118271	F043767	N/A	MENQEQGQSNGHSLFFSRHPSEASAYRRKRLWREKALEALDLLNHIKLEEMATSEHNIQVYEAIRERLKMLKMIDPERKIHQDTLVETTVIKY
Ga0214196_10118272	F038078	AGGA	MKPVFENRMAAKDERKCTVEMKKLKRESIEKFFSLINFIFFMSEEEDITLLRYLHEAKTKVLANSEYWSLVDYTGMTIGRIFRCIDTINVEEKWDSKSNKEWFHEMIKSMNTLKNLHPQWHLTKQDVDRYNTTCPCSQCSTEEGREDTISSSISKLNI
Ga0214196_10118273	F045533	N/A	MAEKPEGNILSSDQRTVNEKEELVCRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINSNKEWNHEDNIKLFTEVRRDMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK