Scaffold Ga0214206_1007655

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1007655
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1671
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084236	Metagenome / Metatranscriptome	112	Y
F103248	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_10076554	F084236	N/A	MLTIKNQYKIVAETIVVSKNGTNEHWVVGDVSQLSDVYDIIVLRKQGIFDTIKLTIRILREKNELGMYSVQIIQNGKIIDRDNIRLSNMKTAEGMLDELKTIMELM
Ga0214206_10076555	F103248	GGA	MLTIQNIDKIINITSPLPYKWYISAVDELYGDLYGFSVYINGKIENIFYLNRESRYMSGRNEPVYRLYKDFDQTKINRWLSLHQISPYFIKQAIDKMLNE