Scaffold Ga0214206_1002904

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1002904
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3421
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021232	Metagenome	219	N
F046110	Metagenome	151	N
F048063	Metagenome	148	N
F055384	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_10029041	F055384	N/A	LMKIMITKPTNTYLHAEHSTWIDLKVGTVMEVRKEGQTGYLVDHPIIEGDCVVQKWNCIEVRDDVECCVTI
Ga0214206_10029044	F021232	GAG	MITVALNQLSYHNCIMKMKQLKQTYIIFTASDTVYCTAESYDLANEIIAADGLIDAVIQQVNHITSIEEGNPVTISYENTSTYDCTSDDVNDVRHKDHY
Ga0214206_10029045	F046110	N/A	MTNRFDESLMHHHGQLSSITSHNVPVDLLNTIEQQVHLIQARQSYATGYKQSYSLILRELMEHIQLKLTGKN
Ga0214206_10029048	F048063	N/A	MLILKCNVTGKEVKWTNKAIIDAKIKQYGSLEAFKAAYVSKGANKKAKVKSTLLKDGEVNLMKSICEEGIKLSPQSIDKSLSTKHMSNEEYVKHYEAKVKALEEANASAAEIGWMKQRLERWRGVAA