Scaffold Ga0214206_1002571

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1002571
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3734
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003714	Metagenome / Metatranscriptome	472	Y
F010765	Metagenome / Metatranscriptome	299	Y
F042864	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_10025713	F010765	N/A	VSALPNPPNPDDVPVSLRDVGIGIAIGSVAWLVRYACSLEKHSLGYIFRRTATAGLTSLLVGLATKGYFSSEGMAFAAAGAAGYASPELVDLLIAKIKAMKGKTPAKG
Ga0214206_10025715	F042864	N/A	MTTKPTGPKAVLIMNKNATDLLKRKVERFRAIASLKGRNDYAKGIGSYALYGIKEAVGQFVVLASEPTAADFNKYVTAKAKAEFVAEYDQVIEYRDAGTANSPKVTFLCWTQEKPDAVN
Ga0214206_10025717	F003714	N/A	MPNANHPMTDTIIVAGRPLTLKRPVAVYAAERLQRIVPQLNALNAAQKTQSDAAAALDTTVCSLRIWLDLTGTTWSNLKKRGPYKRPNA