Scaffold Ga0214206_1001172

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1001172
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6262
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F019636	Metagenome / Metatranscriptome	228	Y
F070899	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100117211	F003439	AGGA	MTVNNSRSQNMSLDEGATDGKYRKARPNTTVIPGLGDQKVKQERAGLHPYMNYGFINSEEQAKVNPGK
Ga0214206_100117212	F070899	GGA	MTKDAGLLTDSTGDGMAGAEDVRLDTQRDLSQTYYNGSKPCIECGLVLNPVQSLHSDMCPNCNRRKAAHLVKGMMA
Ga0214206_100117214	F019636	AGGAG	MTGRMSDGVYSRKPWQAPPEAAYPPQQYVGPFASNQERLLSQSMAVNMMTGQEIQELVRPPLPQVRLFPDRYGYTDSELTIEDIIALPRVNQQRVESDFSQTPNTQESTSTNSLGGSI