Scaffold Ga0214206_1000832

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1000832
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7882
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053079	Metagenome / Metatranscriptome	141	Y
F058734	Metagenome / Metatranscriptome	134	Y
F063402	Metagenome / Metatranscriptome	129	Y
F091108	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100083211	F063402	AGG	MQTIAENIIVKDINTRTLGDESVETRMNAAVRRFNPTKYNVLGFLNRSSQIILQPRFYNVRDSKGRWAKVRQSR
Ga0214206_10008322	F053079	N/A	LTYIIALLHNMNPRVQKLIEMGILPDPNYVPREKVANRFGVMVWDHKTAGTCQVMSGDSFKQAKQYMARPGHRSGIQKLGYRG
Ga0214206_10008328	F091108	AGG	MNKAFLRRQAASKWKDLQCGIWERWDYRCCYLVIRQLDNGKFKPMIGAMGDLSMPGADLPPEDYHQLNTLEEAKNFLHKYVAYIREVWDKQVLENRK
Ga0214206_10008329	F058734	N/A	MQLTIIGNVSELTGNEQKALYTDGADITTGMYYLVADAKEFTVQGKEVTPNLPALRSLSATSNISWIITNFRGNRVAFGSASS