Scaffold Ga0214206

Basic Information
Taxon OID	3300021131 Open in IMG/M
Scaffold ID	Ga0214206_1000497 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300021131 Open in IMG/M

Scaffold ID

Ga0214206_1000497 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	10604
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

10604

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100049710	F048735	N/A	MEYNGLSLQPPADTTYGLSFLESVPQFIRELTCYRLTRGEFGRRERVKMGIKLENTELKNPAQHMINCFQLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQAKYGKDTSIGNLVEYRRMIVFESIDTKDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLFALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVNRYTHKWKTRTGVALHLSGEDSPNFKVPDAEIPPFDRFLTIQGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQSCDIAWEPVWSDRTKVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRIGFYLGTKEYTSSVGDVFEESIASQVVKDCLEYGVHPRDFGLDISGDGGKMLRAIIIEWGRYHPEAMFIHPISSMGMPTERRISSLDKRTAKEAYDRRVTESWFQVHTAMSTKSLVGIDVEKHTALVSELCSRLYFHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVEMLRKTGLEFSFEDEAAESLDILELKDWEDRLIHSKHNAEEQVQNDEWGYGGSGVDEDGF
Ga0214206_10004974	F055388	N/A	MAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSGRCVQNADDVQFEFIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVTPDDQMFIVQPFEGTNEGSFNMGYVYVKLPANQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNANDVSTWPRLVRVLPYYPVTTELGCKYVQNPAFANADFGITNPWVNKAMIKWISPSQSGLGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLIIPAACNLAPNYTPQYTPDCYACSSVITEPI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214206_1000497

Overview

Ecosystem & Geography

Associated Families

Sequences