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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021131 Open in IMG/M |
| Scaffold ID | Ga0214206_1000299 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13853 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008619 | Metagenome | 330 | Y |
| F022651 | Metagenome / Metatranscriptome | 213 | Y |
| F073561 | Metagenome | 120 | Y |
| F096492 | Metagenome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214206_100029911 | F022651 | N/A | MTTIQNNNDLLNFLVTQADQRKDWFGFTQQRLTSINLAHSIATAHADKMTPEAVVAYALKLNQEIYNKIIKGV |
| Ga0214206_100029914 | F096492 | N/A | MALTRYENIKVNTVTAGIDSIGQQTTTITLAFQTRALVQDVRDSMIASKDDRAYTKQVRFVVNYTPNTQNVSINQYQYSINWRNKDYKLLDVLEANDRMTMTFVCYRNDPITSV |
| Ga0214206_10002992 | F073561 | GGA | MAAFNQNTIYQVSGFSNPCISGELVWNQATYWNLAFTNQAGGAVDLTGATINAQIIRREVSNLQDTRTGLSFNIADYTPTPTAITLNIVNLNASAGTFTLVIDDSTWSLVSTDPELEINAQNPVCFSGRIMVNFPAISGGNPADDAVIFLLFLVRSDGIVVV |
| Ga0214206_10002996 | F008619 | AGG | MAFQNIFEIQQKMTVNNRRMVGQQVTRAGYMTTAQYLTAVPWVFTVIPHNFLYYPQVRDIIQGIDNLDRQLPETIIFNSSLLSWFTVMRGTATVATLNGTPAANTQTLLLNSNGTFKAGDFIMINGYSYKITADSSGSSVNIHRPLIGLPTSGTTVYVGNACTFNVVAEQCPTYSLTPMTNGAFVEWSGPFVFREYVTG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |