Scaffold Ga0214206_1000123

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1000123
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 21330
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017969	Metagenome	237	Y
F031035	Metagenome	183	Y
F044314	Metagenome	154	Y
F051705	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100012315	F044314	N/A	VFDIEKIREATFAEYVRLCRLPEWKEWAWAEVKRMDEDDLFKGIKAHVLKEMKNGAVK
Ga0214206_100012328	F017969	GGAGG	MIQTIFIPILFVCMNGNCEFMQAMRYYTRETECRATLDEQKENLRKMALKGGQMVTQIEGTCITLKNGML
Ga0214206_100012330	F051705	N/A	MKITATFNDEEEAIKAIHSGYAWQTLHEINEILRQNRKHDLPFEQVVSQIQASVNDALAMIYPD
Ga0214206_10001235	F031035	GGA	MKDLITLRIQDLMAKGRELEAQIHQVNGALQQCQWMLTELEKQNAPKEIADTQSAE