Scaffold Ga0214206_1000118

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1000118
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 21681
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011059	Metagenome	295	Y
F066497	Metagenome	126	N
F083609	Metagenome / Metatranscriptome	112	N
F100344	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100011812	F011059	GAG	MTKMTYDQWKSRYLTEEASNYDREFRFKFLSDYLLNPNLAAICRLHGVPYDTALTWKKRDWWHEMAEEILANHKDDLLAKQRAILEKTYQELGDRLHNGDEQYIPNEGHVRVKVRANHLATIADTTLKANQLLQGKATQISHVTIESLADKLRTITQQAIEVNPPSETIQQIEQTHQEPE
Ga0214206_100011826	F066497	GAGG	MTESEFKEWKSYHVTEEVFAHIRKAKSEAQDAWANRQFTTEADNQFALGGVYAINQILELEYADIAGV
Ga0214206_100011833	F083609	AGGTGG	MATQILPFQILNDGYRNATLKIAGWVNAGDLSNYVVVDPSTLSQIDAQGTIPSTVRVKRINFDIQDGIQVTLNWDGATPRLLWECAGRGEIKAANFGGFTDNAITPNGKITLTTFGGASTSALTSFTIVLELIKD
Ga0214206_100011836	F100344	GAGG	MANCAVIDKDNVVVNIIVAEPTDIPPEGCTLVEIPFCDIGYIWDGKTFKPQAN