Scaffold Ga0214206

Basic Information
Taxon OID	3300021131 Open in IMG/M
Scaffold ID	Ga0214206_1000045 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300021131 Open in IMG/M

Scaffold ID

Ga0214206_1000045 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	33354
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	51 (78.46%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33354

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

51 (78.46%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015208	Metagenome / Metatranscriptome	256	Y
F037030	Metagenome / Metatranscriptome	168	Y
F052985	Metagenome / Metatranscriptome	141	Y
F053761	Metagenome / Metatranscriptome	140	Y
F054522	Metagenome / Metatranscriptome	139	Y
F095359	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100004527	F053761	GGA	MGARTNYTIITTDNPEQNINVYAHWDGEESVWRMQEAIKAAMPRINDESYAVRIIIDKLTVHGRDSATGYGIYIGAEITHEEEYERKVIDLVNRTVSVGQMTFPLEQFVEVLV
Ga0214206_100004529	F054522	GAGG	MIVKLQVPNNAQMGYGLGKAMQYGVEYSVLDNLQVELTCTDEVRLTKLCVAFQGKVLDVSTIQPVSGDVPKYEVQYARTNRKIPTPRK
Ga0214206_100004532	F052985	GGTGG	VAKHPPVGSASWHSVFADDACKIYQDANDDIFFKVQVKGQRTKYFYNETAHSDVARYCSDELGLAYWSVLN
Ga0214206_100004534	F015208	GGAG	MNYKITCTYDESPVPVFVAQYSDELQAHKEFAKFVDWGLANEYSTVNMYTPTGKCYTKVFYREGRRVVEK
Ga0214206_100004535	F095359	GGA	MTIKIGGLGQEISAYCPVCSEKMTHWAIASKSIRYEWKCEPCELSLKSDKDGYAHILTEMAYYV
Ga0214206_100004553	F037030	AGGAGG	MNNMNTARIRTVWVLICTSILTLMFGLNPESAHALTAPTISYSSDVLYINKYMNLVTIKDMINIDISKKTNSVVYKVVDLATNSTFTMPSYSTKLNLKQRVDNRVIISRLANAILSQETGGVGAYTRQSYSSSACGAFQYMSETWNNFMGYKSACQAPEWVQDMKMIGELKSSYAIYHSWPKAVAAHLSPARAGNIASWSKPLAGNPTVFQYVSSVFQKANIAY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214206_1000045

Overview

Ecosystem & Geography

Associated Families

Sequences