Scaffold Ga0214206_1000041

Overview

Basic Information

• Taxon OID: 3300021131
• Scaffold ID: Ga0214206_1000041
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 34343
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (69.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F009319	Metagenome	319	Y
F017967	Metagenome	237	Y
F028086	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214206_100004116	F028086	N/A	MIKEGVPFGGNLDCPSDECEEAFFALYPDFFYEGSTALTLWTQAWQAAADYIYNTKNQES
Ga0214206_100004118	F002539	AGGAG	MLDNDYVWTAVGTDITIRWRNSGWIPPSELQSYKDKWRYFQNLPLRHLDDIAKVEYENVLKRNKITRVL
Ga0214206_100004121	F017967	AGG	MAIKYYVKAAISEYQDQAGVNKKRYQTIGIVTETKKGDLMMKLEMIPLLGLKEGSLWCYLNVPDDKPESKTQSNSFNQLQDDVPF
Ga0214206_100004134	F009319	GGA	MIETLVKPPQSLDNDVAVIKILQLMGQLSPNDIAYVLRVSLQVYKTIKEIDQK