NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1000026

Scaffold Ga0214206_1000026


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1000026 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)37523
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (81.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019426Metagenome229Y
F028070Metagenome / Metatranscriptome192Y
F028168Metagenome192Y
F064358Metagenome / Metatranscriptome128Y
F071905Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0214206_10000263F064358AGGAGMLCFSCNKSRQNLIPTKSSLLAGIQLFLCQSCVDLKYEPRWVIILAGRQKGADHVREHIVKNLYIGNKISAEEIIA
Ga0214206_100002635F071905AGGAGGMAKSTKLWENKDWVFKRYSVEKKTVLQMAMEAKCSHMTIQRALERFDLIKKPRKWTK
Ga0214206_100002640F028168GAGGMTDKPVIELISELTEFNDMKAYMNDADLDYALDLIIKLIAKPDVPSTKAPDLIVKMQALAAKFAIMSRYYTTFEKGGENSKKKNVYYTAEEAINRLVDALKYSARFGA
Ga0214206_10000265F028070GAGMEKTKYTKEIAKKIREFKPPVKNLLLDIRDRPNYLALTVYESNIMEYNESDRMAIMNYLLLVRQLIQSFGVPCELEGMKYTDEQLRRRRSR
Ga0214206_10000269F019426AGGAMRALVFGSKEWTDYNDLIRQVTLLLEDNKHHYPDDKEFIFVHKGQHGAENMITEYIGKVEKLIKQNGYKIKEELIRDKGSLSDVKMIESEPTIALIFGDSPRNKQCMKLLDVYGIPYRYFAK
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