Scaffold Ga0214180_1002000

Overview

Basic Information

• Taxon OID: 3300021130
• Scaffold ID: Ga0214180_1002000
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 16OCT2007 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4912
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037028	Metagenome	168	Y
F053744	Metagenome	140	Y
F065357	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214180_10020001	F065357	AGAAG	MDIEKSLVRHFTKLDSFNEIWDKGIRSEHFFDEGVRELFDFSLDYYIRSEFKQTITQEFLEEKFDDYFARNEWPEEEYLVGVLVEEMVAKYRKAATQNILLKAANALEDDPEAGISLALSSLSKVQNDTSTRERIEIYGDGYERRSNDYIENTLNNSKEKRG
Ga0214180_10020003	F037028	AGG	MTIEEKSFDGPLVNYDDGDYDEVIEAPVVESKKDLVEEIDLEKADARQLLLYFASRYKEVHGFDYVVDWVKEIAILKAFKDRYGVDAGPMIEILFTKNKGKINDAIMTITAFSKGSKWIQDILHIEVQQNRLKEENRQSTEGLMNTDDFLKRFAI
Ga0214180_10020008	F053744	AGG	MSEASKKPRRRIPLRDDELLFTVAMAASFFDISAQSLRKKEKYLYDSSGKLIEISKTPGGDRRYSLNDILKIAHALRRANKMTDRQLRLIVLRVDAFKEPVKKHRLKYRKGNNPS