Scaffold Ga0214193_1005856

Overview

Basic Information

• Taxon OID: 3300021127
• Scaffold ID: Ga0214193_1005856
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1826
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009320	Metagenome / Metatranscriptome	319	Y
F020513	Metagenome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214193_10058561	F009320	N/A	TLTEQSVREVFEDSYGLNCISGAILNPANDQGKVTNHKAYGINIMRLMMERGTLLVNESCKAFLDEARNYAIDEMGRFSDPDDHIDSARIGILALIQGHGESVVSRANTFANRRIPVIEGKLQRI
Ga0214193_10058562	F020513	AGG	MLFKQNLVVENLASPSGNRGIAEKVCHEAYVKMVDYLRLTQAKNTYNRFTDYHYLNIPVSESTEPVRGIDYIHPVVTPGIDYATAVITKCLMPDGKVNFEFERFDEADQEGAEQATDMVKYFINNKNCAYQIIRDWAQDALMHKNGIVMVMPIRETITQYKEVEGTRDQLKAFELQAAESGLKTLRQQMRRVDVNLQQAMAEAMQPGDEPEEEQEVDPNAELNEAIQNNTIYRAKYKCTGTKTNIRIKHVAQHYFVCNPTIPQIMYQDFVGFYEPMTIHEAKVQYPFIDMERFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYARVVMLTTAWLRKDVDGDGEEEIVEVCYSGSYILYVKEVDFIPLANMCPKPITGNFFGYSLGERLVPIQEYATSIKRAELSFAMQASTPRIGVNPEFVDAEEIQRGVSAMFVLDRKFDPNKHVYEFQPMQGNLAYVESAMA