NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214193_1004919

Scaffold Ga0214193_1004919


Overview

Basic Information
Taxon OID3300021127 Open in IMG/M
Scaffold IDGa0214193_1004919 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2039
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013610Metagenome / Metatranscriptome269N
F018161Metagenome / Metatranscriptome236N
F025270Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0214193_10049191F025270N/AMNQETLENGNTLRSLRVRQATKVSKYKLKRQWQKIAAEALAMLNDVKTNEINTSEHNMAVFNEIFIKIQELRRLDPEREINQYALAQAVITKYNCSLCLPTDDSDYEYEPVNS
Ga0214193_10049192F013610N/AMETSTKTDNPEKKQKIEKQKKLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVTEDKWDCETNKFLFNEIKDSMMKLKRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV
Ga0214193_10049193F018161N/AMSELESKPDYSARQQVVRKIYKVLSRINCIPPFEDTINFRHLQRLHELMRELKSLDPEYPVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHTLDSSNEISSPQSDTSEEGKPFPALNSKNHNGN
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Institute for Fundamental Biomedical Research
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