Scaffold Ga0214193_1004640

Overview

Basic Information

• Taxon OID: 3300021127
• Scaffold ID: Ga0214193_1004640
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2117
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019600	Metagenome / Metatranscriptome	228	N
F026810	Metagenome / Metatranscriptome	196	N
F031767	Metagenome / Metatranscriptome	181	N
F033705	Metagenome / Metatranscriptome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214193_10046401	F026810	N/A	MTNEEHVDLFKGGLKMLLNFITTAIDILNDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDMCKEGRTPDTLHKLKAYQHHVQHLLSKPNPEWTEELMKIHIFSINSTEFEKIKEKVNDPVLVNKLGVVTNQALVLNPSQIEQSQNSVLD
Ga0214193_10046403	F031767	GGA	MNNNPINQKKIIVKRLERKPRQNYVKTLANLKSIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYRKRDVSTNKNS
Ga0214193_10046404	F019600	N/A	MYAPDTDTSKLETGYNLDKSLKEARETVYEGRKAVEELTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSITAYRRYKGDAILTSNLKALNSEILKTTSLVSSSDIGEMKEIIEKLANWELNEQ
Ga0214193_10046405	F033705	N/A	DAIMEDPVVAIHPLDYLFQGLEAAEVLKLHIVSLIKEEANRLKNLKLKLNSVKKLVEVNQTNSRKLVQIFQEDMNIMPLVAKFITILTELDEISACNTISEMIGVLNKISECMLQIQIHL