Scaffold Ga0214193_1003757

Overview

Basic Information

• Taxon OID: 3300021127
• Scaffold ID: Ga0214193_1003757
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2427
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015431	Metagenome	254	Y
F042807	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214193_10037573	F015431	AGGA	MAGRKDVRTTLANFIAPPKVDGINQVFTSFPKRIDFQVNALPSQLSRCAAVIHIESENENRLAIGGAHSGVKRIDYSVAIQLFHHSMERNSEDAMNDLDNVVDNLKTVLRSDHQFGDPSGYLVWQGAEPVISASYGEPMSNDGTSTETWAIIRFDVTQMIQA
Ga0214193_10037575	F042807	GAG	VASVTLSPQKEGDMTKMIPPQGLREVSVRTERGTKVYRADKSGLINVDNPKHAAQMKAEGLGTANAMGSIARPSTVGFTCQKCGFGSFFKKCSKCGEING