Scaffold Ga0214193_1002187

Overview

Basic Information

• Taxon OID: 3300021127
• Scaffold ID: Ga0214193_1002187
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3456
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F027396	Metagenome	194	Y
F052345	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214193_10021873	F021233	AGGAG	MSTLKRGLAPLEGMTEPELGPNHDDRFNELHEFAVRAFTWKTKPDDLALLDTIETVVDEFMDSYVRPAEVIIAQFNTDKSMSVDEQDRLFLNLQSAVTAIEEEVTRRYLKAQYAWYMLDDKYWSAWRKPSSGTQKDLEAVAKAETKEDRQFYFVQYAAWRMINDKVQSLKATQRYIQNQLYRRS
Ga0214193_10021874	F027396	AGAAG	MEEPAPKQRKSRKQEVIQGKMTWQILERLLNNYWEWYEIYLTSGNPDLHLLNGVTVNIYDILKGIDKLPPRQKQAVVLSCLENRKEVEVAKIMGFKKWSSQVGMYKRKALKTLCDTVWKDEID
Ga0214193_10021877	F052345	GAGG	MDRRTREYKDLVKITPTTEELLSEEIDGELYLYKRSSQCKICNTSDDLRGVVDSLLLFPKSYKEVLRTIQPIQEKLGVPDGDRITYDNIRNHQKKHLPFEKALVRDIVERRAREKNRSILDTGERLLTAEAFYEVIVAKGWEEIAMGYSKPTLTQTMHAMEMLRAIEKEDTGDYRPEELINQLDMILLAIREVLPDDMKQALFLKIEEYQGAHATSKKAKVKPPAELEEAEEYIDEDLEEDF