NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214193_1002154

Scaffold Ga0214193_1002154


Overview

Basic Information
Taxon OID3300021127 Open in IMG/M
Scaffold IDGa0214193_1002154 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3486
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044926Metagenome / Metatranscriptome153N
F066726Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0214193_10021541F044926N/ANKIEDLKGLPLNVEKWIRMKDERKKLKLLQRAQRIYTCRDKTEDKEKVFNFGILTLLKSEFCEREISDLTLWKIVTITKLIYTMVSILESISFFFLVYRVID
Ga0214193_10021542F066726GGAMATSEEEKSCSGLVPHLKLLRVITLGNLIKLQYTREEYPNLSLGNLFSQLIDIVFEVVEELSFRFEQEKLLTPFLEPVKPFFEQVFALTYPNLNPFREALVPIYREKMFNKKEFLKEPSCIEPTLRRIGQGAFITGWILTEGSATFFKSQKSTFDNVCESLHYFGKILLVLNKVQEYLEISRAILEKKVLRRKVVIPPESTGEQIQELVQIFNNHIGSIYENCQAHHKKLFKTLPLEIDCLILKIYVSSSKSLGATAVNSEQNCLLFQEAKELKLTSRTCKVGEWPYSKLIDFREGIEPCKEVKEKVLAKKWTNITIEEPNEKFKCDCDACISQKPYACQQPLMKRHQLIENPFFLKFQK
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