NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214193_1001239

Scaffold Ga0214193_1001239


Overview

Basic Information
Taxon OID3300021127 Open in IMG/M
Scaffold IDGa0214193_1001239 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4899
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017597Metagenome / Metatranscriptome239N
F019778Metagenome / Metatranscriptome227N
F024477Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0214193_10012391F024477N/AVSYDIIKNSSKASSFELLIKNITLIEKVEDFYKELDQITSYRFNCHGKPDPDIYFMKDIIKIRLMELERLQMQKINELIVNDLNEDL
Ga0214193_10012392F017597N/AMKIFRSEKLLIKLAMKKKELIKTTKSSKPVLIKTEMITRILIAALRAKHVIAIRFQVNRTNNLLIWG
Ga0214193_10012393F019778N/AMSLGVKPQTELIFLYIGESRLIKRISNDILIVLHEDAKSINTIKLKELLQFKIRGRLSYLNHLAMSTVKEEAKYASALYTQLDSLLAILSSDDKVTAIKLITKICSAYRANKETVQSTAQTSNNFEKMEIG
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