Scaffold Ga0214193_1000505

Overview

Basic Information

• Taxon OID: 3300021127
• Scaffold ID: Ga0214193_1000505
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8859
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (36.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F016243	Metagenome / Metatranscriptome	248	N
F016494	Metagenome / Metatranscriptome	246	N
F022147	Metagenome / Metatranscriptome	215	N
F031075	Metagenome / Metatranscriptome	183	N
F089846	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214193_100050515	F011134	N/A	MSTFAKSEENYDSKETLVDTIKTNLVSQFKMCVDDINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRIEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK
Ga0214193_100050516	F089846	N/A	MDSNQNIFRNINKAIRAITPGVYNDAQVENLMKIYDVIVAEKEVNPSWQLPSPETRKRKKAKLK
Ga0214193_100050521	F016243	N/A	MNEAQITKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIKDSKAEFIQRLLEVSDSRESLKIQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVIYEFLIENCENE
Ga0214193_100050522	F022147	GAG	MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLREVITFHNKKYRVQKSKDIVTLEKVSIANKLLIKTLSEEVRNALKEQLALVSKVGSTFTNLSLMYTYIENKDLSLQSEAKSRQWSNEYQE
Ga0214193_10005053	F016494	N/A	MSQKDNNSEDIAIDNFTELTQLVKSTLQTVDELFPPKPEFSFEDMMIQFYTLKSRIKKIDPSWKFENTDTSYVFEILKLLDAVNIEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGIIKFLYPTLNTQLS
Ga0214193_10005054	F031075	N/A	MSQEKSTSVSEIVNRKENPEDCGHEVNACTCPPDKEYEKYTKIRALTHLIGMINFMPPFDGPISYGPLERIWNFKKQIRKIDPNWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTVTKLRTIHPNWQMYLEDSKNHHFCKCYSCSEIKRKYQEELDATSSEELSSEEENGK