NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214193_1000411

Scaffold Ga0214193_1000411


Overview

Basic Information
Taxon OID3300021127 Open in IMG/M
Scaffold IDGa0214193_1000411 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)10182
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001937Metagenome / Metatranscriptome614Y
F102392Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214193_10004112F001937AGGMFTNVNAATIVYSYFFVFAALLAGMGIIAKHAISKHTEELKDKLTRIEYALYNDGKTGLINKVEELLENQQLIKIDVEVMKAKYETE
Ga0214193_100041124F102392AGGAGMKIACKENHWRIKGTQLILDTPEGQEAIKKMTIAIQARVRLDIYEEICALDLTTRRKQIVKNGLEVSLLQVQDLCAQIALGEQK

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