NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214187_1002283

Scaffold Ga0214187_1002283


Overview

Basic Information
Taxon OID3300021126 Open in IMG/M
Scaffold IDGa0214187_1002283 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 24JUN2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3333
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010669Metagenome / Metatranscriptome300Y
F015058Metagenome / Metatranscriptome257N
F015181Metagenome / Metatranscriptome256N
F058690Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0214187_10022831F010669N/AMELELTRMEQSEDDLTDPSDSEDSNMGISETHWPSDPSEVKCRIHAYVAHEQEILAELLNELESEVQTNSENIIVERIKRCFRCIDDIIEYATQFLKQARLIEMRDFTGFYYEIENEAKQTIRQALTIVSTLRRGNLFHLAPSVKGLVIELDYIRILVSRKTLEQVKETLEEYGARRTHTLREIEELFP
Ga0214187_10022833F015058N/AMDDSWIYTLNSDMMRKEREKLKGQGIVISNLISEGQNKTDKEKKYLKILEFMNSIEVLVHFAEQALIWTTRSQLRPGTQIPADAVKTLTYNDHESLKQKLGTIAVARASILKRKGLMQFHSLSESGNNPVDLCETEKTIVLMKLEARLLQLEHLYKSLLEIKPVELKMFQ
Ga0214187_10022834F015181N/AMNQTLLSKEDVMILDLLERVKIKENTLIEESKKQDFIREIQLENFSSEKRRFLVKLLVQNTELKLACKEEKGIASYVTEKFFQMKTLDISDEQLLQQEIVTFQQKLGRIAQLKEKVKIDKGEVANELFKTKTSERMSVILKELSTLLYKTNIRLSNSGLMYNYIISKLFKLVDNGKPAYQAEAMDWTTTYEEK
Ga0214187_10022835F058690N/AMSLLTKEELEVRLEQIQQEKIDVIRKKQRATEKLSRRGLTREYRATLLDHIKLLITMEEKLHEFEAQCNVMLHHLNHHCKC

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