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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021126 Open in IMG/M |
| Scaffold ID | Ga0214187_1002283 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 24JUN2008 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3333 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010669 | Metagenome / Metatranscriptome | 300 | Y |
| F015058 | Metagenome / Metatranscriptome | 257 | N |
| F015181 | Metagenome / Metatranscriptome | 256 | N |
| F058690 | Metagenome / Metatranscriptome | 134 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214187_10022831 | F010669 | N/A | MELELTRMEQSEDDLTDPSDSEDSNMGISETHWPSDPSEVKCRIHAYVAHEQEILAELLNELESEVQTNSENIIVERIKRCFRCIDDIIEYATQFLKQARLIEMRDFTGFYYEIENEAKQTIRQALTIVSTLRRGNLFHLAPSVKGLVIELDYIRILVSRKTLEQVKETLEEYGARRTHTLREIEELFP |
| Ga0214187_10022833 | F015058 | N/A | MDDSWIYTLNSDMMRKEREKLKGQGIVISNLISEGQNKTDKEKKYLKILEFMNSIEVLVHFAEQALIWTTRSQLRPGTQIPADAVKTLTYNDHESLKQKLGTIAVARASILKRKGLMQFHSLSESGNNPVDLCETEKTIVLMKLEARLLQLEHLYKSLLEIKPVELKMFQ |
| Ga0214187_10022834 | F015181 | N/A | MNQTLLSKEDVMILDLLERVKIKENTLIEESKKQDFIREIQLENFSSEKRRFLVKLLVQNTELKLACKEEKGIASYVTEKFFQMKTLDISDEQLLQQEIVTFQQKLGRIAQLKEKVKIDKGEVANELFKTKTSERMSVILKELSTLLYKTNIRLSNSGLMYNYIISKLFKLVDNGKPAYQAEAMDWTTTYEEK |
| Ga0214187_10022835 | F058690 | N/A | MSLLTKEELEVRLEQIQQEKIDVIRKKQRATEKLSRRGLTREYRATLLDHIKLLITMEEKLHEFEAQCNVMLHHLNHHCKC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |