Scaffold Ga0214187

Basic Information
Taxon OID	3300021126 Open in IMG/M
Scaffold ID	Ga0214187_1001838 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 24JUN2008 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300021126 Open in IMG/M

Scaffold ID

Ga0214187_1001838 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 24JUN2008 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3963
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3963

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (10.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026810	Metagenome / Metatranscriptome	196	N
F031767	Metagenome / Metatranscriptome	181	N
F033695	Metagenome / Metatranscriptome	176	N
F033705	Metagenome / Metatranscriptome	176	N
F055458	Metagenome / Metatranscriptome	138	N
F088320	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214187_10018381	F026810	N/A	MASINRRLLTMTKEEHIDLFKGGLKMLLNFITTAIDILNDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDMCKEGRTPDTLHKLKAYQHHVQHLLSKPNPEWTEELMKIHIFSINSTEFEKIKEKVNDPELVNKLGVVTNQTLVLNPSQLEQSQNSALDLSLSKQ
Ga0214187_10018382	F033695	N/A	MEGFNQEFKLAMEEVQELTKRAAICSSQEHNKPMKIDIKAVQYYRLEVSKRIDYIQEMMEIFPFKTDIFYLWKIHQNILKLLSMILRNEDQKDRCQKLNSYVKVLEKFKNETDYSYWKDYISIHENKIVEGS
Ga0214187_10018383	F031767	GGA	MNNNPINQKKIIVKRLERKPRQNYVKTLASLKSIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKRDVSTNKNS
Ga0214187_10018385	F033705	N/A	MEDPVVAIHPLDYLFQGLEAAEVLKLHIVSLIKEEANRLKNLKLKLNSVRKLVEVNQTNSRKLVQIFQEDLNIMPLVAKFITILTELDEISACNTISEMIGVLNKITECMLQIQIHLN
Ga0214187_10018387	F088320	N/A	MSQVSENRRREIEDSKRKLAESIMMINGLLSLLEGHKRMLSERNQVDPSNGKISVAKEAVKIMADKIKEVLDLNELRLEENIVTQ
Ga0214187_10018388	F055458	N/A	MATFIKGSMCEILALISSQQKEMIKELEKFPLSKRILVENEVDEATDKLIELLTELQLTFVIETETEDS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214187_1001838

Overview

Ecosystem & Geography

Associated Families

Sequences