Scaffold Ga0214211_1005567

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214211_1005567

Scaffold Ga0214211_1005567

Overview

Basic Information
Taxon OID	3300021125 Open in IMG/M
Scaffold ID	Ga0214211_1005567 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1356
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023279	Metagenome / Metatranscriptome	210	N
F035195	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214211_10055671	F035195	AGAAG	MEYRTLKTEAEVIELVQNSLNNVETEKSFEDNYEVMLKLFCAIKRLKSIRPKGTFRAVGVSFKQVSTPQK
Ga0214211_10055672	F023279	GAG	MADSSKENTEAIVDTIKSELAIGFKNCIDKIDTEKKVVDRYNWEIYVKINKILHNSRRLDPQWTIEGDIGNSWSLNSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRVNNPGWSINKTRRSSPILLTPTQIGLQEESTSQID

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