Scaffold Ga0214211

Basic Information
Taxon OID	3300021125 Open in IMG/M
Scaffold ID	Ga0214211_1002548 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300021125 Open in IMG/M

Scaffold ID

Ga0214211_1002548 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	2219
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2219

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019600	Metagenome / Metatranscriptome	228	N
F026810	Metagenome / Metatranscriptome	196	N
F031767	Metagenome / Metatranscriptome	181	N
F033695	Metagenome / Metatranscriptome	176	N
F058942	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214211_10025482	F019600	N/A	MYTPDTDTSKLETGYNLEKSLKEARETVYEGRKAVEELTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSITAYRRYKGDAILTSNLKALNSEILKTTSLVSSSDIGEMKEIIEKLANWELNEQ
Ga0214211_10025483	F031767	GGA	MNSNPINQKKIIVKRLERKPRQNYVKTLASLKGIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKRDVSTNKNS
Ga0214211_10025484	F033695	N/A	MEGFNQEFKLAMEEVQELTKRAAICSSQEHNKPMKIDIKAVQYYRLEVSKRIDYIQDMMEIFPFKTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLNSYVKVLEKFKNETDYSYWKDYISIHENKILEGS
Ga0214211_10025485	F026810	N/A	MAASINRRILTMTNEEHIDLFKGGLKMLLNFITTAIDILNDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDMCKEGRTPDTLHKLKAYQHHVQHLLSKPNPEWTEELMKIHIFSINSTEFEKIKDKVNDPVLVNKLGVVTNQALVLNPSQIEQSQNSVLDLSLPRQ
Ga0214211_10025486	F058942	N/A	MNKSSNIEENNKVVQYLTEKIDSLELIENFYNKVQDLLGQGVDIKFPPDLDFNYHRELIKIRKQDISFARWTFQLQVIRLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214211_1002548

Overview

Ecosystem & Geography

Associated Families

Sequences