Scaffold Ga0214211_1000554

Overview

Basic Information

• Taxon OID: 3300021125
• Scaffold ID: Ga0214211_1000554
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7245
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F016243	Metagenome / Metatranscriptome	248	N
F024477	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214211_100055410	F011134	N/A	MSTFAKLEENYDSKETLVDTIKTDLVSQFKVCVDDINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRIEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK
Ga0214211_100055416	F016243	N/A	MNEAQITKIVMRLATRSRWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIKDSKAEFIQRLLEVSDSRESLKVQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVIYKFLIENCENE
Ga0214211_100055421	F024477	N/A	MSYDIIKISSKASSFELLIKNITLIEKVEDFYKELDQITNYRFECHGKPDPDIYYMKDIIKIRLIELER