NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214211_1000503

Scaffold Ga0214211_1000503


Overview

Basic Information
Taxon OID3300021125 Open in IMG/M
Scaffold IDGa0214211_1000503 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7991
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045530Metagenome / Metatranscriptome152Y
F061527Metagenome / Metatranscriptome131N
F066480Metagenome / Metatranscriptome126N
F076862Metagenome / Metatranscriptome117N
F086589Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0214211_100050312F045530GAGMIKSITEKLEFLNSMEEFYQKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMVHMSKTGLIKIYKSKEQIKKVYNTAITEEGTRGHVDEEGPPRKIFSGICTRQKDPTELRWKQR
Ga0214211_100050313F086589N/AMEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSQQGDGDEIFLSANTDTRHSLNEISQNSQKGD
Ga0214211_10005037F076862N/AMSDPSHNSTVEEITKGIRTLDTDNQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMVKNLLESNSSRTHTIARQYGRKYPPLTGPLARMLMDLADLEDLVSCKEIEEMKEVIEDLDNW
Ga0214211_10005038F066480N/AMDIFKERENQVVSKLLFIQGGQPIYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQMNVFSKEEKVLQELLKYILERMMSCLDTENKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE
Ga0214211_10005039F061527N/AMSNYFEQAFSEILSAIKELTIKIGTAIRIEQQKVPADPSIRTVHYYHMIIREKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALGESNPKSKYVQLKLLHRMLGDFENNSTFSYWKDHVILGDRAVRETDG

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