Basic Information | |
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Taxon OID | 3300021125 Open in IMG/M |
Scaffold ID | Ga0214211_1000503 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7991 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (15.38%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F045530 | Metagenome / Metatranscriptome | 152 | Y |
F061527 | Metagenome / Metatranscriptome | 131 | N |
F066480 | Metagenome / Metatranscriptome | 126 | N |
F076862 | Metagenome / Metatranscriptome | 117 | N |
F086589 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214211_100050312 | F045530 | GAG | MIKSITEKLEFLNSMEEFYQKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMVHMSKTGLIKIYKSKEQIKKVYNTAITEEGTRGHVDEEGPPRKIFSGICTRQKDPTELRWKQR |
Ga0214211_100050313 | F086589 | N/A | MEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSQQGDGDEIFLSANTDTRHSLNEISQNSQKGD |
Ga0214211_10005037 | F076862 | N/A | MSDPSHNSTVEEITKGIRTLDTDNQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMVKNLLESNSSRTHTIARQYGRKYPPLTGPLARMLMDLADLEDLVSCKEIEEMKEVIEDLDNW |
Ga0214211_10005038 | F066480 | N/A | MDIFKERENQVVSKLLFIQGGQPIYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQMNVFSKEEKVLQELLKYILERMMSCLDTENKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE |
Ga0214211_10005039 | F061527 | N/A | MSNYFEQAFSEILSAIKELTIKIGTAIRIEQQKVPADPSIRTVHYYHMIIREKIDQLSSRVAIMSFKTDQYCLLKVYGTLLIMVNRALGESNPKSKYVQLKLLHRMLGDFENNSTFSYWKDHVILGDRAVRETDG |
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